Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7158
Gene Symbol: TP53BP1
TP53BP1
0.010 Biomarker disease BEFREE γ-H2AX and 53BP1 foci do not seem to be promising diagnostic or disease activity biomarkers in patients with early MS. Lymphocytic DNA double-strand breaks are unlikely to play a major role in the pathophysiology of MS. 26820970 2016
Entrez Id: 3014
Gene Symbol: H2AX
H2AX
0.020 AlteredExpression disease BEFREE γ-H2AX expression in peripheral blood mononuclear cells (PBMCs) was recently proposed as a diagnostic and disease activity marker for multiple sclerosis (MS). 26820970 2016
Entrez Id: 2571
Gene Symbol: GAD1
GAD1
0.020 AlteredExpression disease LHGDN [Determination of gamma-aminobutyric acid concentration and activity of glutamate decarboxylase in blood serum of patients with multiple sclerosis]. 12774663 2003
Entrez Id: 1410
Gene Symbol: CRYAB
CRYAB
0.100 GeneticVariation disease BEFREE [Alpha]B-crystallin is a candidate autoantigen in MS, and there are three polymorphisms in the promoter region of the encoding gene (CRYAB): at positions -C249G, -C650G, and -A652G. 14610128 2003
Entrez Id: 2146
Gene Symbol: EZH2
EZH2
0.030 Biomarker disease BEFREE Zeste homolog 2 (EZH2) has sparked extensive interest because of its pleiotropic roles in distinct pathologic contexts.<b>Areas covered</b>: This review summarizes the epigenetic functions and the biological significance of EZH2 in the etiology of rheumatoid arthritis (RA), systemic lupus erythematosus (SLE), type 1 diabetes (T1D), inflammatory bowel disease (IBD), multiple sclerosis (MS), and systemic sclerosis (SSc). 31747802 2019
Entrez Id: 5806
Gene Symbol: PTX3
PTX3
0.010 Biomarker disease BEFREE Yet, we did not detect PTX3 in cerebrospinal fluid of MS patients. 26576501 2016
Entrez Id: 3456
Gene Symbol: IFNB1
IFNB1
0.400 Biomarker disease BEFREE Women with relapsing-remitting (RR) MS were randomly assigned (1:1:1) to receive subcutaneous IFN-β-1a (Rebif<sup>®</sup>, Merck Serono, Geneva, Switzerland) 44 mcg three times a week (tiw) (group 1), subcutaneous IFN-β-1a 44 mcg tiw plus ethinyl estradiol 20 mcg and desogestrel 150 mcg (Mercilon<sup>®</sup>, MSD Italia SRL, Rome, Italy) (group 2) or subcutaneous IFN-β-1a 44 mcg tiw plus ethinyl estradiol 40 mcg and desogestrel 125 mcg (Gracial<sup>®</sup>, Organon Italia S.p.A., Rome, Italy) (group 3) in a randomised controlled trial, for which we report the analysis of secondary outcomes. 27995531 2017
Entrez Id: 3117
Gene Symbol: HLA-DQA1
HLA-DQA1
0.200 GeneticVariation disease BEFREE Within these protective haplotypes in DR2-negative individuals, both DQA1 alleles and one DQB1 allele (*0604) were protective, but neither DR allele was protective, i.e., DQ loci may be more important than DR loci in encoding molecules protective against MS. Predispositional (Phe67) and protective (Ile67) DR beta sequence motifs were present in the total and DR2-negative patient and control groups. 8780100 1996
Entrez Id: 8099
Gene Symbol: CDK2AP1
CDK2AP1
0.010 Biomarker disease BEFREE Within the MPHOSPH9/CDK2AP1 locus, the risk allele correlates with diminished RNA expression of the cell cycle regulator CDK2AP1; this effect is seen in both lymphoblastic cell lines (P=1.18 x 10(-5)) and in peripheral blood mononuclear cells from subjects with MS (P=0.01). 20555355 2010
Entrez Id: 10198
Gene Symbol: MPHOSPH9
MPHOSPH9
0.110 AlteredExpression disease BEFREE Within the MPHOSPH9/CDK2AP1 locus, the risk allele correlates with diminished RNA expression of the cell cycle regulator CDK2AP1; this effect is seen in both lymphoblastic cell lines (P=1.18 x 10(-5)) and in peripheral blood mononuclear cells from subjects with MS (P=0.01). 20555355 2010
Entrez Id: 100271849
Gene Symbol: MEF2B
MEF2B
0.010 AlteredExpression disease BEFREE Within the 1051 highly variable genes that differentiated between multiple sclerosis-to-be and multiple sclerosis-free subjects, we identified activation of TCR signaling that triggered the Cbl and MAPK cascade in concert with downstream synergic over-expression of NFAT and MEF2B, but failed to augment the expression of the nuclear receptor gene family members NR4A1, NR2F1, VDR and MEF2B, that further resulted in impaired apoptotic machinery. 20079437 2010
Entrez Id: 3105
Gene Symbol: HLA-A
HLA-A
0.200 Biomarker disease BEFREE Within case-sibling pairs, the presence of HLA-A-A3 and/or B7 affected measles antibody titers more than the presence of MS. 6267516 1981
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.040 Biomarker disease LHGDN Within and around active MS plaques lacking remyelination, Jagged1 was expressed at high levels by hypertrophic astrocytes, whereas Notch1 and Hes5 localized to cells with an immature oligodendrocyte phenotype, and TGF-beta 1 was associated with perivascular extracellular matrix in the same areas. 12357247 2002
Entrez Id: 28567
Gene Symbol: TRBV20-1
TRBV20-1
0.010 GeneticVariation disease BEFREE With this aim, we evaluated the influence of the TCRBV20S1 polymorphism by assessing it with the transmission disequilibirum test (TDT) in 652 T1D and 616 MS families, without detecting any significant difference. 21927869 2012
Entrez Id: 361
Gene Symbol: AQP4
AQP4
0.100 Biomarker disease BEFREE With the discovery of the disease-specific aquaporin-4 antibody and the increasing recognition of clinical and characteristic imaging patterns of brain involvement in what is now termed neuromyelitis optica spectrum disorder (NMOSD), MRI now plays a greater role in diagnosis of NMOSD based on the 2015 consensus criteria and in distinguishing it from other inflammatory disorders, particularly multiple sclerosis (MS). 29388807 2018
Entrez Id: 6347
Gene Symbol: CCL2
CCL2
0.100 Biomarker disease BEFREE With respect to chronic neuroinflammation, a critical role for MCP-1 has been established in animal models for multiple sclerosis. 12556201 2003
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.400 GeneticVariation disease BEFREE With respect to MS, IL-1 beta (-511 C/T; rs16944), IL-1 beta (+3954 C/T; rs1143634), IL-1 alpha (-889 C/T; rs1800587), IL-1 alpha (+4845 G/T; rs17561), and the variable number of tandem repeats in intron 2 of the IL-1 receptor antagonist (IL-1RN) gene polymorphisms have been studied in different ethnic groups, leading to conflicting results. 20192980 2010
Entrez Id: 2913
Gene Symbol: GRM3
GRM3
0.010 Biomarker disease BEFREE With regard to T cells of MS patients: (1) The cell surface expression of a specific GluR: the AMPA GluR3 is elevated in T cells of MS patients during relapse and with active disease, (2) Glutamate and AMPA (a selective agonist for glutamate/AMPA iGluRs) augment chemotactic migration of T cells of MS patients, (3) Glutamate augments proliferation of T cells of MS patients in response to myelin-derived proteins: MBP and MOG, (4) T cells of MS patients respond abnormally to glutamate, (5) Significantly higher proliferation values in response to glutamate were found in MS patients assessed during relapse, and in those with gadolinium (Gd)+ enhancing lesions on MRI. 28236206 2017
Entrez Id: 2892
Gene Symbol: GRIA3
GRIA3
0.010 Biomarker disease BEFREE With regard to T cells of MS patients: (1) The cell surface expression of a specific GluR: the AMPA GluR3 is elevated in T cells of MS patients during relapse and with active disease, (2) Glutamate and AMPA (a selective agonist for glutamate/AMPA iGluRs) augment chemotactic migration of T cells of MS patients, (3) Glutamate augments proliferation of T cells of MS patients in response to myelin-derived proteins: MBP and MOG, (4) T cells of MS patients respond abnormally to glutamate, (5) Significantly higher proliferation values in response to glutamate were found in MS patients assessed during relapse, and in those with gadolinium (Gd)+ enhancing lesions on MRI. 28236206 2017
Entrez Id: 129831
Gene Symbol: RBM45
RBM45
0.100 Biomarker disease BEFREE With a view to an association of HLA class II genes, specifically HLA-DRB1 subtype DRB1*15 to multiple sclerosis we investigated the HLA class II DR haplotype in 29 unrelated X-ALD patients including 17 childhood cerebral phenotype patients. 7488132 1995
Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
0.500 Biomarker disease BEFREE With a view to an association of HLA class II genes, specifically HLA-DRB1 subtype DRB1*15 to multiple sclerosis we investigated the HLA class II DR haplotype in 29 unrelated X-ALD patients including 17 childhood cerebral phenotype patients. 7488132 1995
Entrez Id: 1380
Gene Symbol: CR2
CR2
0.020 PosttranslationalModification disease BEFREE While we identified new single nucleotide polymorphism (SNP) and confirmed previously reported SNPs, none of the SNPs was associated with MS. Our findings demonstrate that sCD21 expression is altered in MS patients similar to other autoimmune diseases although no evidence was found for a specific role of the CD21 gene in MS. 22137275 2012
Entrez Id: 51285
Gene Symbol: RASL12
RASL12
0.010 Biomarker disease BEFREE While this phenomenon has been well described for multiple sclerosis (MS) patients, it never has been tested on asymptomatic subject with magnetic resonance imaging (MRI) findings suggestive of demyelinating disease (i.e., radiologically isolated syndrome: RIS). 28831591 2017
Entrez Id: 348
Gene Symbol: APOE
APOE
0.400 Biomarker disease BEFREE While part of the association of the apoE polymorphism with AD is supposed to be caused by apoE-isoform dependent effects on amyloid-beta deposition, no single pathogenetically relevant mechanism has yet been confirmed for MS. 16631796 2006
Entrez Id: 8163
Gene Symbol: CDR3
CDR3
0.100 GeneticVariation disease BEFREE While no clones that shared the same CDR3 amino acid sequences were seen in either HC or MS patients, there was a cluster of related CDR3 amino acid sequences observed for 18 out of 34 MS patients when evaluated by phylogenetic tree analysis. 30674904 2019